Scaffold is a tool to help mass spectrometrists
and medical researchers confidently
identify proteins in biological samples. Using
output from SEQUEST., Mascot., or
X! Tandem, Scaffold validates, organizes, and
interprets mass spectrometry data,
allowing you to more easily manage large amounts
of data, compare samples, and
search for protein modifications.

Scaffold makes it easier to search data
repeatedly, using new tools to find results you
might otherwise have missed. For example,
Scaffold enables you to selectively export
unidentified spectra, which you can then search
against a larger database to find
additional proteins.

Scaffold Q+ software is an add-on to Scaffold 2
that analyzes relative quantitation across
multiple iTRAQ and TMT experiments.

Scaffold Q+ provides researchers with an
experiment-wide view of quantitation plus the
ability to display and analyze multiplexed
experiments.

http://www.proteomesoftware.com/

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