VIDA is a graphical interface designed from the ground-up to
visualize, manage and manipulate large sets of molecular
information. It supports all standard visualization
paradigms, including 2D depiction, both hardware and softwa
stereo, surface selection and manipulation, and many other
unique facilities. VIDA reads and writes a wide range of
formats. VIDA also interfaces to OpenEye's other modeling
software for analysis of generated data.

http://www.eyesopen.com/products/applications/vida.html

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